my factory battery location is in the trunk, and i added a second battery, and i have had bad alternator whine for forever. + from alternator is on the right side of wheel well,and then follows rear seat. There is a bundle of wires that i run parallel to alt +. i tried to sketch them as normally routed, with the amps in roughly the right location. transition from dashed to solid is where they are above the trunk floor liner for +/-. i was thinking about changing the RCA running on the drivers side from the front of the car, instead of passenger side.
pink:rca
green: speaker wires
blue box: sub
grey: grounds
reds: +
long story short, am i experiencing this because of rca in proximity to alt +, or the mess of wires coming in/out of the amps?