Tips for an IB setup:
Seal the trunk from the cabin, this sounds like a no-brainer but can be difficult to do properly. This means you need to seal the rear parcel shelf, the back seat, the pockets that go over the rear wheels, etc... If it can leak into the cabin, seal it.
Also with an IB setup the trunk acts as your enclosure. So a smaller trunk is kind of like having a smaller sub box, but usually the differences will be minimal since the trunk is still likely to be quite a bit larger than the "optimal" sub box.
If you are looking for an added element of control, you could always try and fashion your own Aperiodic Membrane in front of or behind the woofer. Basically this becomes a resistively leaky box that in theory will produce the snappy bass on higher sub frequencies yet still go deep on lower frequencies. In the early/mid 90's these were almost a must have for SQ competitors.
A good subsonic is good to have, but again, subsonic filters have become a "standard" on amps only in the last decade or so (maybe late 90's) and cars still sounded great in IB setups before then as well. It's not like a vented enclosure where the sub loses all linearity below it's F3 point, in this case it is still a linear roll off of about 6 dB/octave since it is just a large sealed box.