First make sure both amps gains are turned all the way down, crossovers on the amp(s) and radio all set to fullpass, and any eq set to flat if your testing output of the headunit through the amp! Otherwise you will have mixed output voltages.
In your case, I would test the ends of the RCAs for the max volume of the headunit using 0db tone (40hz for subs, 1khz for mids/high).
Plug your rca cables in again, then set the gains of those 2 amps at -5 or -10db (40hz for subs, 1khz for mids/high).
If one of those 2 amps is still putting out more voltage than the other goto your amp that is putting out less power, take your cc-1 and calibrate it to that amp, than move your cc-1 over to the louder amp and adjust the gain down until it is shown good on the cc-1.
You should then be good to go with both amps putting out the same power.